Students

It's been a pleasure to do research with the following students.

Current

• Moyeen Uddin  (PhD, kernel density estimation)

Former

Postdoctoral

• Thomas Christof  (1998, physical mapping of chromosomes)

PhD

• Dan DeBlasio  (2016, multiple sequence alignment; Assistant Teaching Professor at Carnegie Mellon U; former Assistant Professor at U Texas El Paso; former Lane Postdoctoral Fellow at Carnegie Mellon U with Carl Kingsford)
• Eagu Kim  (2008, inverse parametric alignment; postdoc at U Wisconsin-Madison with Colin Dewey)
• Spencer Krieger  (2022, reaction pathway inference; Lane Postdoctoral Fellow at Carnegie Mellon U with Jian Ma)
• Dean Starrett  (2008, multiple sequence alignment; postdoc at UC Berkley with Kimmen Sjölander)
• Travis Wheeler  (2009, multiple alignment and phylogeny; Associate Professor at U Arizona; former Associate Professor at U Montana; former postdoc at HHMI Janelia Research Campus with Sean Eddy)
• August Woerner  (2016, nearest neighbor search; postdoc at U North Texas with Bruce Budowle)

MS

• Guoxin Huang  (2021, computational astronomy)
• Yuhua Liu  (1997, suffix-tree data structure)
• Ryan Melzer  (2020, computational astronomy)
• Jonathan Myers  (2001, DNA sequence assembly)
• Lisa Peairs  (2013, inverse parametric optimization)
• Justin Pecqueur  (1998, maximum matchings in general graphs)
• David Perkins  (2009, protein secondary structure prediction)
• Jackson Toeniskoetter  (2015, computational astronomy)
• Eric Welch  (2017, computational astronomy)
• Benjamin Yee  (2014, protein secondary structure prediction)
• Jun Yu  (2000, DNA sequence assembly)

BS

• David Celaya  (2012, protein secondary structure prediction)
• Katie Cunningham  (2011, asthma epigenetics)
• Shloka Desai  (2015, inverse parametric optimization)
• Matthew Gietl  (2015, metric space clustering)
• Norbert Grabinger  (2015, software runtime prediction)
• Nathan Holle  (2018, metric space clustering)
• David Porfirio  (2016, protein secondary structure prediction)
• Arman Reyes  (2012, asthma epigenetics)
• Benjamin Salazar  (2011, protein secondary structure prediction)
• Joseph Thomas  (2010, nearest neighbor search)
• Benjamin Yee  (2012, asthma epigenetics)